SEQanswers - View Single Post - Which feature file for htseq-count for non coding elements of ribodepleted samples?

dpryan · 05-10-2016, 11:58 AM

UCSC references...kind of suck. Use Gencode/Ensembl and you'll get more complete coding and non-coding transcripts. Having said that, for lincRNAs you might want to check out lincrnadb or RNAcentral.

05-10-2016, 11:58 AM	#2
dpryan Devon Ryan Location: Freiburg, Germany Join Date: Jul 2011 Posts: 3,480	UCSC references...kind of suck. Use Gencode/Ensembl and you'll get more complete coding and non-coding transcripts. Having said that, for lincRNAs you might want to check out lincrnadb or RNAcentral.