SEQanswers - View Single Post - Allowing a high number of mismatches when mapping

Jane M · 07-25-2016, 12:56 AM

Thank you Brian for your suggestion.
I am doing some tests with Bowtie on shorter sequences and if it doesn't work, I will try BBMap. The maximum length I can use is 23 bp. Would it be sufficient?

07-25-2016, 12:56 AM	#3
Jane M Senior Member Location: Paris Join Date: Aug 2011 Posts: 239	Thank you Brian for your suggestion. I am doing some tests with Bowtie on shorter sequences and if it doesn't work, I will try BBMap. The maximum length I can use is 23 bp. Would it be sufficient? Last edited by Jane M; 07-25-2016 at 02:08 AM.