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Old 09-27-2011, 06:32 AM   #1
kjaja
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Location: NY

Join Date: Aug 2011
Posts: 55
Default aligning the reads

Hi,

I am planning to use CASAVA to align the reads to the reference genome using the fastq files. I was wondering if there are any quality control filtering steps that needs to be done before aligning the reads?

Thanks for your help

Kay
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