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Old 02-14-2012, 11:08 AM   #3
ETHANol
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Location: Western Australia

Join Date: Feb 2010
Posts: 308
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The UCSC genome browser doesn't like reads that map off the ends of chromosomes or negative numbers. You can run this little script I wrote on your file or since it is so small just open it up with a text editor and fix the offending line.

http://sourceforge.net/projects/etha...dRepair.pl.gz/
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