Hello everybody,
I have the following problem: I have a bam file with all the aligned sequences (it was filtered with bamtools filter -isMapped true).
However I would like to filter not only the aligned reads BUT the aligned reads above a certain threshold (e.g. 200) in this way I can filter those sequences that align to a ref with just 1 or two reads
There is a way to do it?
Thanks!
I have the following problem: I have a bam file with all the aligned sequences (it was filtered with bamtools filter -isMapped true).
However I would like to filter not only the aligned reads BUT the aligned reads above a certain threshold (e.g. 200) in this way I can filter those sequences that align to a ref with just 1 or two reads
There is a way to do it?
Thanks!
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