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Old 02-01-2013, 05:42 AM   #4
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Location: Stockholm, Sweden

Join Date: Feb 2008
Posts: 319

The files are surely not too big to parse with perl (for your purposes) if you do it right - you only need to have four lines at a time (or maybe just one) in memory. Also it might be a good opportunity to learn some BioPerl :-)
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