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Old 10-23-2014, 06:13 AM   #7
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,054
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Don't think there is a free local GUI alignment program for windows. There are commercial ones (CLC, Geneious etc).

Ask your bioinformatics person to show you how to use linux in a virtual machine. If your needs are limited to this one application then you should be able to use blat in linux virtual machine.

If the programmer can write a GUI interface on windows then perhaps (s)he can use the mappacbio8k.sh from BBTools (which is a java program and can run natively on windows).
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