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Old 08-19-2010, 04:59 AM   #23
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Join Date: Apr 2009
Posts: 32

Originally Posted by query View Post
What is the best tool available to map 454 reads to a reference genome? What is the method used by gs reference Mapper (analysis tool that comes with 454) and does it do a decent job of mapping and identifying variants?
You may wish to try the mapper in NextGEne it is especially robust for the detection of indels using a 3 step can obtain a free time limited trial on the softgenetics web site.
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