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Old 08-22-2010, 06:57 PM   #28
boyzoe
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Location: Changsha, China

Join Date: Jul 2010
Posts: 4
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Quote:
Originally Posted by lh3 View Post
Ssaha2 is designed for high throughput sequencing. As I said, it is usually faster than blat, although less easy to use, I would say.
Actually, I couldn't install in ubuntu. After extraction, I could see the files (read me, ssaha2, ssaha2build, ssaha snp). However, after put the command into terminal, it told me that command can't found. This bothers me for a week.

My RNA-seq data is not for a species that genome is sequenced but zebrafish genome maybe suitable for these sample are fishes which are close relative of zebrafish. The goal is to analysis SNP and recombination in hybirds and their parents. Is there any guys have idea?

Really appreciate for you guys!

Last edited by boyzoe; 08-23-2010 at 07:35 AM.
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