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Old 10-13-2014, 11:34 AM   #3
ezattara
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Location: Washington DC

Join Date: Apr 2013
Posts: 4
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You should check http://trinityrnaseq.sourceforge.net/ for details.

But something like the following should get you running:

Trinity --seqType fq --JM 100G --single reads.fq --CPU 6

Check your available RAM memory and number of cores to assign correctly the JM and CPU parameters. Substitute "reads.fq" for your read file.
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