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Old 07-17-2014, 07:03 AM   #41
Location: US

Join Date: Apr 2010
Posts: 62

Originally Posted by arcolombo698 View Post
@ Clarissa

normally with CGH experiments you are comparing a tumor sample with a non-tumor sample. my data has a germline sample and also a tumor sample. the germline is used as a reference. So you should have two samples to compare.

Thanks for the response.
In my experiment I have 2 different chickens lines - broiler x layer. But I have individual samples from broilers and layers. Should I combine all my broilers and layers? But I want to check in each sample (chicken). I have 10 broilers and 10 layers. I dont have a control sample. So maybe I need a control from another chicken line? I am not sure because in my experiment I detect SNPs using a reference from NCBI (chicken reference genome).
Any suggestions?
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