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Old 08-04-2014, 04:50 AM   #1
Location: UK

Join Date: Jun 2012
Posts: 14
Default Big question - Transcriptome annotation

Hi guys,

I have just finished to assemble my transcriptome ( I used Trinity, N50 is 2000, I am quite happy with it).
Now I would like to annotate it, particularly for doing some SNPs calling and want to know if they fall in CDSs or UTRs (I am using 6 populations, also looking for some good pipeline if you know one that uses transcriptomes).

I am aware of Trinotate, but is there something more "easy" or straightforward?

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