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Old 02-05-2015, 05:41 AM   #5
wingtec
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Location: Charlottesville, VA

Join Date: Apr 2010
Posts: 33
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With all that said, if I am allowed to twist the question a bit.

Say, I already have some Affy microarray data and I want to better or at least confirm the array data with RNA-Seq. The Affy chip used was HG ST gene array and the experiment was done with n=3. Now we want to do also n=3 in RNA-Seq, will 20M clean read of PE2x100 have similar or better coverage than the array data?

Thanks

Wing
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