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Old 12-14-2015, 02:31 AM   #7
Location: Spain

Join Date: May 2010
Posts: 11

Hi Kurban910.
Blast2GO should work fine for the functional annotation of an assembled transcriptome. The most time consuming step will be the blasting. You can do this locally and import the XMLs or at the NCBI. You can download Blast2GO here here and need to register for a free account here.
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