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Old 06-21-2017, 03:48 AM   #2
colindaven
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Location: Germany

Join Date: Oct 2008
Posts: 413
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From exomes I have seen on that platform about 50000 good variants are to be expected. 1m is way too high for an exome.

Perhaps you need to filter more on quality, I would recommend filtering with vt etc. Also check the calls in a genome browser.

Best,
Colin
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