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Old 05-24-2013, 10:04 AM   #6
jwag
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Join Date: Apr 2013
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Mate-pair refers to the way the sample was prepared, but are sequenced the same way as regular paired end libraries. Regular PE reads are outside in (L>====<R) but because of the way mate-pair libraries are prepared, MP sequences are actually inside out (L<====>R) because of the circularization step.
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