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Old 10-03-2013, 09:28 AM   #6
blubucki
Junior Member
 
Location: MI

Join Date: Aug 2013
Posts: 1
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Hello everyone, this is my 1st post on this great forum and I look forward to your help.
I am trying to find the chimeric/fusion/split reads in my WGS NGS library. I tried bwasw with SE reads or PE alignment,.but not sure how it flags the chimeric/split reads in the output sam file. Or if there's another way to find them.
Can someone please help me in this.
Thanks a lot.
Best!
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