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Old 11-07-2013, 10:59 AM   #3
rndouglas
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Location: USA

Join Date: Jun 2012
Posts: 23
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This is what I had been doing all along (running everything in one count table), but then this morning I thought I'd try A vs. B in a separate count table.

I was surprised to find almost double the loci with padj < 0.05 compared to when I ran everything in one count table (and hence my new-found concern).
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