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Old 01-23-2015, 01:22 PM   #4
maubp
Peter (Biopython etc)
 
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543
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If you want one sequence per FASTA file, either call blastdbcmd many times in a loop, or divide the big FASTA file using a tool like EMBOSS seqretsplit http://emboss.open-bio.org/rel/rel6/...qretsplit.html or a simple script.
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