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Old 01-23-2015, 09:05 PM   #5
Dave_Carlson
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Location: San Diego, CA

Join Date: Sep 2013
Posts: 3
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Quote:
Originally Posted by maubp View Post
If you want one sequence per FASTA file, either call blastdbcmd many times in a loop, or divide the big FASTA file using a tool like EMBOSS seqretsplit http://emboss.open-bio.org/rel/rel6/...qretsplit.html or a simple script.
Thanks! With a bit of fiddling around, I was able to get blastdbcmd to output the sequences I needed (and in the order I needed them to be in), and then I used Fasta Splitter to separate the putatively-paralogous sequences into their own files. Thanks for taking the time to help me!
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