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Old 02-10-2019, 07:00 PM   #1
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Location: Melbourne

Join Date: Apr 2015
Posts: 1
Default Program to view multiple alignment files at once

I have aligned reads to a database containing 10 reference sequences using BWA MEM, and now have .sam and .bam files.

Is there a program that would allow me to few those 10 alignments within the one .sam/.bam file all at once?

I am currently using Tablet, but this only allows me to view the alignment for each reference sequence one at a time.

Alternatively, is there a program that would allow me to view multiple .sam/.bam files at once, when each of those .sam/.bam files have only 1 reference sequence?

I'm sorry if this question has been answered before but I couldn't find a post that answered this for me.

Thank you for your help.
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