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Old 06-06-2019, 04:08 AM   #2
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,076
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If you are planning to use SMRTlink then use the bax and bas files.

There are other options like flye (https://github.com/fenderglass/Flye ) and canu (https://github.com/marbl/canu) that may be better than SMRTlink and they can use the fastq files.
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