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Old 08-27-2012, 03:56 AM   #3
Location: USA

Join Date: Jun 2012
Posts: 23

Thanks for the suggestion!

I also contacted the program author directly and was told that this sort of thing has popped up with Illumina data before.

With Illumina input the program uses the length of the first line in the input FASTA as the maximum length. In my case, the first line always happened to be a 24nt sRNA.

When I moved a 28nt sRNA to the top of the list the program ran as desired.
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