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Old 11-09-2012, 07:59 AM   #2
rndouglas
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Location: USA

Join Date: Jun 2012
Posts: 23
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Cranking up the frustration a notch....

This week I discovered the same situation (up to 20 mismatches on a 24 nt "mapped" read) occurs when I set -v to 0, supposedly not allowing for mismatches.



This happens with ~4-5 loci I'm interested in mapping to, but several other loci of similar length do not show this problem at all.
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