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Old 08-11-2020, 04:38 PM   #1
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Location: Chapel Hill, NC

Join Date: Sep 2015
Posts: 4
Default Using scRNA-seq to help with snRNA-seq clustering


I am working with a single nucleotide RNA-seq (snRNAseq) dataset. These are often hard to cluster compared to single cell RNA-seq (scRNAseq). I was wondering if you could combine a snRNAseq and scRNAseq using Seurat's integration method, and after assigning clusters, filter out the scRNAseq cells leaving you with (hopefully) better clustered snRNAseq data to continue the analyses.

Matt.Kanke is offline   Reply With Quote