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Old 03-12-2015, 06:17 PM   #2
ygc
Junior Member
 
Location: HK

Join Date: Jan 2014
Posts: 1
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Please check the version of clusterProfiler installed in your system.

You definitely using an out-of-date version.


> sessionInfo()
R version 3.1.2 (2014-10-31)
Platform: x86_64-apple-darwin14.1.0 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] clusterProfiler_2.1.8 RSQLite_1.0.0 DBI_0.3.1
[4] magrittr_1.5

loaded via a namespace (and not attached):
[1] annotate_1.44.0 AnnotationDbi_1.29.17 AnnotationForge_1.8.2
[4] Biobase_2.27.1 BiocGenerics_0.13.4 Biostrings_2.35.11
[7] Category_2.32.0 colorspace_1.2-6 digest_0.6.8
[10] DO.db_2.8.0 DOSE_2.5.8 fortunes_1.5-2
[13] genefilter_1.48.1 GenomeInfoDb_1.3.13 ggplot2_1.0.0
[16] GO.db_3.0.0 GOSemSim_1.25.4 GOstats_2.32.0
[19] graph_1.45.1 grid_3.1.2 GSEABase_1.28.0
[22] gtable_0.1.2 httr_0.6.1 igraph_0.7.1
[25] IRanges_2.1.40 KEGG.db_3.0.0 KEGGREST_1.7.4
[28] lattice_0.20-30 MASS_7.3-39 Matrix_1.1-5
[31] munsell_0.4.2 parallel_3.1.2 plyr_1.8.1
[34] png_0.1-7 proto_0.3-10 qvalue_1.43.0
[37] RBGL_1.42.0 Rcpp_0.11.5 RDAVIDWebService_1.4.0
[40] reshape2_1.4.1 rJava_0.9-6 S4Vectors_0.5.21
[43] scales_0.2.4 splines_3.1.2 stats4_3.1.2
[46] stringr_0.6.2 survival_2.38-1 tools_3.1.2
[49] XML_3.98-1.1 xtable_1.7-4 XVector_0.7.4
[52] zlibbioc_1.13.1
>
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