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Old 06-28-2010, 09:11 PM   #1
jlfmssm
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Location: Boston

Join Date: Apr 2010
Posts: 14
Smile coverageBed question

I try to run coverageBed like this:
/home/ay55/BEDTools/bin/genomeCoverageBed -ibam 1382_1_sorted.bam -i hg18.bed.sorted -g hg18.genome > hg18_seq.cov.txt

no error at all, but when I open hg18_seq.cov.txt, I got this
read block failed - CheckBlockHeader() returned false
Could not read header type

Any idea?
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