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  • RNA-Seq: A survey of statistical software for analysing RNA-seq data.

    Syndicated from PubMed RSS Feeds

    A survey of statistical software for analysing RNA-seq data.

    Hum Genomics. 2010 Oct 1;5(1):56-60

    Authors: Gao D, Kim J, Kim H, Phang TL, Selby H, Tan AC, Tong T

    High-throughput RNA sequencing is rapidly emerging as a favourite method for gene expression studies. We review three software packages - edgeR, DEGseq and baySeq - from Bioconductor http://bioconductor.org for analysing RNA-sequencing data. We focus on three aspects: normalisation, statistical models and the testing employed on these methods. We also discuss the advantages and limitations of these software packages.

    PMID: 21106489 [PubMed - in process]



    More...

  • #2
    wow! Newsbot had a yummmy Turkey it seems.. so many posts :P
    --
    bioinfosm

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    • #3
      Originally posted by bioinfosm View Post
      wow! Newsbot had a yummmy Turkey it seems.. so many posts :P
      no kidding! so many posts for 1 day
      L. Collado Torres, Ph.D. student in Biostatistics.

      Comment


      • #4
        Haha! It was in fact that all of his (its?) posts were approved instead of the usual weeding out that I do. The search terms I use pick up a lot of extraneous stuff that isn't relevant.

        Comment


        • #5
          Haha ok Anyhow, I did end up download several of the papers
          L. Collado Torres, Ph.D. student in Biostatistics.

          Comment


          • #6
            Has anybody found a copy of this article yet...?

            Comment


            • #7
              I haven't been able to download it from it's main site: http://henrystewart.metapress.com/ap...lts,1:121141,1 but maybe your institution has a subscription.

              Greetings,
              Leonardo
              L. Collado Torres, Ph.D. student in Biostatistics.

              Comment


              • #8
                I was also looking for a copy, but no luck yet..
                --
                bioinfosm

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                • #9
                  Who can get the paper? sent it to me.
                  Thank you

                  Comment


                  • #10
                    The paper isn't posted yet- just listed in "forthcoming content" on the journal website.

                    Comment


                    • #11
                      Oh, I will wait for it is in public accession!

                      Comment


                      • #12
                        searched for the title:

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                        • #13
                          Thank for schmima

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