Thread: MACS SAMfiles
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Old 12-17-2010, 06:26 AM   #1
khb
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Location: Oslo

Join Date: Dec 2010
Posts: 15
Question MACS SAMfiles

Hi
I've used MACS to find peaks in a SAM file, and I got a line in the peaks.bed file in SAM with negative start (-98) so I cannot upload the file in UCSC genome browser.
chrM -98 4052 macs_PEAK_50677 971.81
Does somebody understand the reason for this output? Is there a bug in MACS when it finds hits the negative strand?
Thanks
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