View Single Post
Old 06-10-2011, 10:56 PM   #2
Senior Member
Location: Phoenix, AZ

Join Date: Mar 2010
Posts: 279

For BWA you will need to build a new one the TopHat (aka bowtie) index will not work. Human hg19 build takes around 3 hours on a typical system. For genome source I'd suggest the 1000 genomes version of GRCh37 (aka hg19)
Jon_Keats is offline   Reply With Quote