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Old 06-10-2011, 10:56 PM   #2
Jon_Keats
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Location: Phoenix, AZ

Join Date: Mar 2010
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For BWA you will need to build a new one the TopHat (aka bowtie) index will not work. Human hg19 build takes around 3 hours on a typical system. For genome source I'd suggest the 1000 genomes version of GRCh37 (aka hg19)
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