Hi everyone. I prepped some samples with Nextera xt kit and run them on the next seq. I monitored the run and everything was fine until the uploading step. I can see cluster density, %pf and %q30, and in the run completion file it says CompletedAsPlanned. So I don't understand why in the status it says Failed. Can you guys help me troubleshooting? Seems like nothing has gone wrong.
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I use basespace to monitor the run status remotely and also to download the fastq file because the nextseq machine is shared with other people so we use it just to set up the sequencing. I just don't understand why it stopped. I can actually see a fastq file generated but the size is small probably because it has data just for a few samples?
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