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Old 09-07-2017, 06:58 AM   #12
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,885
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You could use reformat.sh from BBMap suite to set a fake Q score of 30 for each base like this.

Code:
reformat.sh in=pbio_input.bam out=stdout.fa | reformat.sh in=stdin.fa out=new.fq.gz qfake=30
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