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Old 12-18-2017, 12:03 AM   #15
gringer
David Eccles (gringer)
 
Location: Wellington, New Zealand

Join Date: May 2011
Posts: 824
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As fas as I know, canu also doesn't use quality scores for assembly. By default it does its own error correction based on an all-vs-all read mapping, and produces corrected FASTA files (i.e. without quality scores) as intermediate data files prior to assembly.
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