Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • htseq installation distutils problem

    Hi all,

    after entering "sudo python setup.py install" I got this:

    symlinking folders for python2
    Could not import 'setuptools', falling back to 'distutils'.
    Traceback (most recent call last):
    File "setup.py", line 193, in <module>
    **kwargs
    File "/usr/lib/python2.7/distutils/core.py", line 111, in setup
    _setup_distribution = dist = klass(attrs)
    File "/usr/lib/python2.7/distutils/dist.py", line 259, in __init__
    getattr(self.metadata, "set_" + key)(val)
    File "/usr/lib/python2.7/distutils/dist.py", line 1220, in set_requires
    distutils.versionpredicate.VersionPredicate(v)
    File "/usr/lib/python2.7/distutils/versionpredicate.py", line 113, in __init__
    raise ValueError("expected parenthesized list: %r" % paren)
    ValueError: expected parenthesized list: '>=0.9.0'

    I am not really familiar with Unix (I am a user, not a system programmer), so hopefully the solution to this might be easy.

    ???

    lg Alois

  • #2
    addendum

    python 2.7 is installed and runs without problems.

    Just HTSeq wont do as ordered.

    lg Alois

    Comment


    • #3
      Do you have other installations of python? Do you use anaconda/jupyter or canopy?

      Comment


      • #4
        I think, "no" to all those questions. But again, I am for sure not an expert in Linux.

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Strategies for Sequencing Challenging Samples
          by seqadmin


          Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
          03-22-2024, 06:39 AM
        • seqadmin
          Techniques and Challenges in Conservation Genomics
          by seqadmin



          The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

          Avian Conservation
          Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
          03-08-2024, 10:41 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, Yesterday, 06:37 PM
        0 responses
        11 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, Yesterday, 06:07 PM
        0 responses
        10 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 03-22-2024, 10:03 AM
        0 responses
        51 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 03-21-2024, 07:32 AM
        0 responses
        67 views
        0 likes
        Last Post seqadmin  
        Working...
        X