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Old 12-03-2017, 05:55 PM   #2
neavemj
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Location: MA, USA

Join Date: Feb 2014
Posts: 53
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Hi ML1975,

I just checked my latest protein BLAST databases. They also do not create a *.pal file, but they work fine with blastp or blastx. I think the *.pal files are only created if you have a large database.

- what is your exact BLAST command?
- are you using the latest BLAST version?

Cheers,

Matt.
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