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Old 09-22-2011, 10:26 AM   #3
maubp
Peter (Biopython etc)
 
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543
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You have a weird typo "foolwong" just above the FASTQ example.

Also your introduction about the different FASTQ encodings is out of date now. Illumina now follow the Sanger convention. They also changed the read naming convention, in particular the old /1 and /2 suffixes are gone

See this thread for details:
http://seqanswers.com/forums/showthread.php?t=8895

Also I've never heard FASTQ called a "FastAlignment and Quality file" (glossary on last page).
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