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Old 10-11-2011, 06:30 AM   #16
Location: Belo Horizonte - Brazil

Join Date: Jun 2010
Posts: 38

All right,

Here is my pipeline, some metrics and logs ...

Even after using a bed file from "SeqCap EZ Human Exome Library v2.0" i'm still getting 350191 variants ... Hope someone can help me to get to the promised 20k variants.

I'm planning to switch to GATK 1.2 on the next few weeks ...
Attached Files
File Type: gz gatk_logs.tar.gz (172.5 KB, 97 views)
File Type: txt run.txt (7.5 KB, 274 views)
File Type: pdf GATK Metrics.pdf (438.3 KB, 391 views)
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