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Old 06-14-2012, 06:14 AM   #1
kmkocot
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Location: Alabama

Join Date: Jun 2009
Posts: 48
Default Need to identify conserved exons among 3 genomes

Hi all,

I want to identify conserved exons present in 3 eukaryotic genomes. I have the complete genomic scaffolds, predicted transcripts, and predicted proteins. My goal is to design degenerate primers that will amplify relatively conserved exons for a phylogenetic study.

Can anyone suggest a good strategy for doing this?

Best,
Kevin
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