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Old 04-19-2013, 02:57 AM   #1
Location: italy

Join Date: Apr 2012
Posts: 45
Default survery: what assembler, gene prediction and gene annotation softwares do you use?

Hi everyone,
i'm going to analize some Ion Torrent metagenomic data and have read a lot of posts about different softwares but i have very limited time and can't decide what one to try first.

Anyone tryed different softwares and can say what's the best one?

Please post the ones you use so i can give them a try

I usually run assembly with MIRA and it's working excellently, expecially the last developmental version 3.9.x, so i was tinking to stick with this one for the assembly.

Any suggestion for gene prediction and gene composition analysis tools?

Thanks for the help!

Last edited by Gorbenzer; 04-19-2013 at 05:48 AM.
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