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Old 04-24-2017, 10:04 AM   #2
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,088

Want to make you aware of BBSplit from BBMap.

Following is not completely thought through so take with a grain of salt.

There seem to be too many unknowns in this design to be able to use BBsplit directly. You could bbsplit all samples against each other to see if you can get as much of the leafhopper out as you can but it is going to take out some of the common bacteria as well.

Is there a related genome (to leafhopper) available? That would be the second best bet.

Last edited by GenoMax; 04-24-2017 at 10:08 AM.
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