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Old 10-14-2011, 05:54 AM   #3
mgogol
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Location: Kansas City

Join Date: Mar 2008
Posts: 197
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Code:
genomeCoverageBed -bg -ibam $file.sorted.bam -g sacCer2.fa.fai > file.bedgraph

wigToBigWig file.bedgraph sacCer2.fa.fai file.bw
There may be a way to put those two together, come to think of it.

(bash)

Code:
wigToBigWig <(genomeCoverageBed -bg -ibam async.sorted.bam -g sacCer2.fa.fai) sacCer2.fa.fai file.bw
You could also try IGV, which does the histogram for you.
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