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Old 01-30-2013, 03:23 AM   #4
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
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Quote:
Originally Posted by manojdarolia View Post
I have few genes for a grass species. now I want to compare the structure of these genes (like length of gene and protein, no. of exons and introns, size of exons and introns, GC content in these regions, etc) with their homologs from other sequenced genomes. Any suggestions or softwares that can do this analysis in one go? Thank you
Mauve (http://gel.ahabs.wisc.edu/mauve/) is worth a try, if your target genomes are not very dissimilar.

You could also use blast/blat searches, identify the homologous regions in new genomes and then use the software in post #2.
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