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Old 10-03-2019, 01:54 PM   #1
cement_head
Senior Member
 
Location: Oxford, Ohio

Join Date: Mar 2012
Posts: 253
Default SMRT Link 7.0 - HGAP

Has anyone gotten the HGAP assembler to work? It seems that it just barfs at different places constantly. Doesn't seem to be very robust at all.

I've used CANU before, so I'm going to try to go back to that...

What about the wtdbg2assembler?

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My mistake - a corrupted downloaded data file was the culprit; should have checked the mdm5 checksum before starting!

Last edited by cement_head; 10-06-2019 at 07:12 AM. Reason: correction
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