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Old 10-03-2019, 02:34 PM   #2
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Location: Eugene, OR

Join Date: May 2013
Posts: 521

What kind of genome are you trying to assemble? I usually go with flye as a first pass (fast, memory efficient) and then Canu if flye underperforms (they seem to trade off which gives a better assembly in our hands). wtdbg2 is fun to try a quick check but I don't think it is as feature complete as flye or canu.
Providing nextRAD genotyping and PacBio sequencing services.
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