Dear All,
i am doing quality filtering of my fastq file using fastq_quality_filter
and i am getting this error
Premature End-Of-File (filename ='-')
my code is
nohup fastq_quality_filter ‐v ‐q 20 ‐p 100 -Q33 ‐i GO06_2500_Mate.read2.fastq ‐o Read2.filteredQ20.GO06.fastq > fastq_quality_filterlog &
my fastq look like
@GO06_2500_Mate:1_4_72/2
NGAAGGGTGGGCATGTNATTGNGGGTNATGTNANNTNNNNTNNNNNNNN
+
!%(''(%%&/%%%%'&!)'+%!%&+1!%)'(!%!!(!!!!)!!!!!!!!
@GO06_2500_Mate:1_5_104/2
NGAAAGGAGGGAGAGGNAAGTNAGTTNAGGTNGNNTNNNNTNNNNNNNN
+
!'&(%(*0'&+&%+%%!%*)%!(+%(!'&%(!(!!'!!!!%!!!!!!!!
@GO06_2500_Mate:1_9_50/2
NAAATAAAAAGCCGGAAAAGTNGGGTNAATGNANNTNNNNANNNNNNNN
+
!%'*'%&&%(*%%)1(%)(**!%&),!)%%%!%!!%!!!!(!!!!!!!!
can any body help me with this error i
i am doing quality filtering of my fastq file using fastq_quality_filter
and i am getting this error
Premature End-Of-File (filename ='-')
my code is
nohup fastq_quality_filter ‐v ‐q 20 ‐p 100 -Q33 ‐i GO06_2500_Mate.read2.fastq ‐o Read2.filteredQ20.GO06.fastq > fastq_quality_filterlog &
my fastq look like
@GO06_2500_Mate:1_4_72/2
NGAAGGGTGGGCATGTNATTGNGGGTNATGTNANNTNNNNTNNNNNNNN
+
!%(''(%%&/%%%%'&!)'+%!%&+1!%)'(!%!!(!!!!)!!!!!!!!
@GO06_2500_Mate:1_5_104/2
NGAAAGGAGGGAGAGGNAAGTNAGTTNAGGTNGNNTNNNNTNNNNNNNN
+
!'&(%(*0'&+&%+%%!%*)%!(+%(!'&%(!(!!'!!!!%!!!!!!!!
@GO06_2500_Mate:1_9_50/2
NAAATAAAAAGCCGGAAAAGTNGGGTNAATGNANNTNNNNANNNNNNNN
+
!%'*'%&&%(*%%)1(%)(**!%&),!)%%%!%!!%!!!!(!!!!!!!!
can any body help me with this error i
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