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Old 11-22-2010, 07:44 AM   #3
lskatz
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Location: Atlanta

Join Date: Sep 2010
Posts: 9
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Quote:
Originally Posted by maubp View Post
My reading of the BioPerl text you quote suggests you just need to tell the parser it is a 454 Ace file, not a "standard" Ace file. i.e. There is no need to convert it.

Have you asked on the BioPerl mailing list?
Yes I've tried telling it that it is a 454 Ace file, using both the variant syntax and the ace-454 syntax. I get the error using either one.

I asked the mailing list at the end of last week, but no response yet.

I think this is the case of "it should work but it doesn't for me" and if anyone has a spare minute I would appreciate a tested code snippet.
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