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Old 11-22-2010, 08:31 AM   #6
maubp
Peter (Biopython etc)
 
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543
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Quote:
Originally Posted by lskatz View Post
It's down there at the end. If you think it's helpful I'll send again to the list with all those details.
http://lists.open-bio.org/pipermail/...er/034275.html
Oh yeah - I see it now, the title surprised me, that was all.
Quote:
Originally Posted by lskatz View Post
My OS is Ubuntu 8.
There were two Ubuntu releases in 2008, so Ubuntu 8 isn't specific.

Ubuntu 8.04 (Hardy Heron) or Ubuntu 8.10 (Intrepid Ibex)?

Quote:
Originally Posted by lskatz View Post
BioPerl: I have a global version of bioperl, and I installed the latest version of Assembly::IO into a local directory.
Code:
$ perl -MBio::Root::Version -e 'print $Bio::Root::Version::VERSION,"\n"'
1.006001
$ perl -MBio::SeqIO -e 'printf "%vd\n", Bio::Assembly::IO::ace::VERSION'
66.105.111.58.58.65.115.115.101.109.98.108.121.58.58.73.79.58.58.97.99.101.58.58.86.69.82.83.73.79.78
Wow - that is a crazy version number
Quote:
Originally Posted by lskatz View Post
Error message after running the perl code (shown in the first post):
Code:
Can't call method "get_consensus_sequence" on an undefined value at Bio/Assembly/IO/ace.pm line 280, <GEN0> line 93349.
Thank you for helping!
I know very little Perl - hence suggesting asking on the BioPerl mailing list. And yes, if I were you I would reply to your previous message with the extra version information.
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