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Old 02-18-2016, 11:25 AM   #50
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,784
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@DNA_sorcerer: @Brian would be along later today with an official answer but first thing to check is what version of java is running on your node/cluster.

Post output of

Code:
$  java -version
If I remember this right, @Brian only validates BBMap suite against java v.1.7 and 1.8.

You also may be missing a leading "/" in you file paths (scratch/s_3_1_sequence.fastq) unless "scratch" directory is in the directory from where you are running your command.
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