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Old 02-19-2016, 08:02 AM   #55
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
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Do you know how many cores there are on the node that you are running this on (16 was an example, you may have more or less available on the hardware you have access to)? Are you providing the necessary request for using all available cores on a node in your SGE command line?

Having a multi-threaded job spread out across physical nodes would not be advisable and may lead to the kind of errors you are seeing above.
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