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Old 05-20-2014, 09:44 AM   #7
Nino
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Location: New York City

Join Date: Mar 2013
Posts: 27
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Hey Guys,

I am getting this weird error for my hg19.fa genome file.

this is my command line argument:
genomeCoverageBed -d -i Sample_23430_B14_T.sorted.dedup.rg.resorted.realigned.bed -g /pbtech_mounts/fdlab_store003/fdlab/genomes/human/hg19/indexes/bwa/genome/hg19.fa 1> Sample_23430_B14_T.sorted.dedup.rg.resorted.realigned.coverage

and I get this error:
Less than the req'd two fields were encountered in the genome file (/pbtech_mounts/fdlab_store003/fdlab/genomes/human/hg19/indexes/bwa/genome/hg19.fa) at line 1. Exiting.

anyone know why, I can't seem to figure it out.

Thanks!,
Nino
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